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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125170439_125182322_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
125170439 - 125182322
Intron Length:
11884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTATGCTTAACT
Flanking Amino Acid:
ATRYGRSPGARMVSWGKQHC
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
39.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.4
0.93
0.6
85.5
29.2
Minor 5ss
38.7
-1.3
2.9
47.6
48
Minor BPS
71.4
0.75
1.8
84.67
41.9

Associated Gene:

Gene:
ADGRG2
Ensembl Gene ID:
ENSAPLG00000008909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045569
125170017 - 125228865
58849
ENSAPLT00000029271
125170017 - 125228865
58849