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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125170796_125182322_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
125170796 - 125182322
Intron Length:
11527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGGTTT
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTATGCTTAACT
Flanking Amino Acid:
PQSRSLGLAPRMVSWGKQHC
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
70.8
41.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.4
0.93
0.6
85.5
29.2
Minor 5ss
41.8
-0.9
3.7
64.2
47.3
Minor BPS
71.4
0.75
1.8
84.67
41.9

Associated Gene:

Gene:
ADGRG2
Ensembl Gene ID:
ENSAPLG00000008909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029410
125170680 - 125228865
58186