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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12518018_12518948_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12518018 - 12518948
Intron Length:
931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTGAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
CTTTTCTTGAAG
Flanking Amino Acid:
GVCFCDLGYTASHGTCVSNV
Intron Amino Acid Position:
1433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
81
0.7
0.9
83
26
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
63.4
0.28
1.5
66.96
41

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011979
12456661 - 12742790
286130