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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125182442_125188007_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125182442 - 125188007
Intron Length:
5566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
LHLFLATAGKDHEDFLGRYK
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85
0.79
0.7
85.6
27.9
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
ADGRG2
Ensembl Gene ID:
ENSAPLG00000008909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045569
125170017 - 125228865
58849
ENSAPLT00000029410
125170680 - 125228865
58186
ENSAPLT00000029271
125170017 - 125228865
58849
ENSAPLT00000009316
125180065 - 125228865
48801