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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12519107_12520919_R

Intron Information:

Intron Rank:
28
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12519107 - 12520919
Intron Length:
1813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCTAT
5'SS Class:
weak_major
3'SS Sequence:
TGTTCCTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TGTTCCTCTACA
Flanking Amino Acid:
TIVIPRSLAASKTRFRWIQE
Intron Amino Acid Position:
1380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.42
1.2
66
42.4
Major BPS
79.4
0.73
1
80.1
32
Major PPT
83.3
0.75
0.8
76.9
31.9
Minor 5ss
50.1
0
2.9
73.3
43.6
Minor BPS
63.5
0.42
1.9
77.03
39.3

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011979
12456661 - 12742790
286130