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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125197785_125199561_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
125197785 - 125199561
Intron Length:
1777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTAAACAAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTTTTTACAT
Flanking Amino Acid:
CDTEETTRPAVLHSGESAAT
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
86.9
30.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
54.9
0.11
1.1
55
38.1
Minor 5ss
39.9
-1.1
3.1
56.9
47.4
Minor BPS
64.8
0.54
1.7
84.29
36.6

Associated Gene:

Gene:
ADGRG2
Ensembl Gene ID:
ENSAPLG00000008909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045569
125170017 - 125228865
58849
ENSAPLT00000029410
125170680 - 125228865
58186
ENSAPLT00000029271
125170017 - 125228865
58849
ENSAPLT00000009316
125180065 - 125228865
48801