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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125199601_125201541_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125199601 - 125201541
Intron Length:
1941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTACCA
Flanking Amino Acid:
SGESAATTSSEMSSDDTTKT
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.8
0.98
0.5
92.8
16.7
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
64.8
0.46
1.6
74.03
38.5

Associated Gene:

Gene:
ADGRG2
Ensembl Gene ID:
ENSAPLG00000008909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029410
125170680 - 125228865
58186
ENSAPLT00000009316
125180065 - 125228865
48801
ENSAPLT00000045569
125170017 - 125228865
58849