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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125205392_125206834_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125205392 - 125206834
Intron Length:
1443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTGTTTCTAACA
Flanking Amino Acid:
ERNTSLNVEIINNVTINDQV
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
0.9
80.7
31.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
81.1
0.7
0.9
77.7
35.5
Minor 5ss
40.5
-1.1
3.4
59.8
40
Minor BPS
63.9
0.43
1.6
75.22
36.5

Associated Gene:

Gene:
ADGRG2
Ensembl Gene ID:
ENSAPLG00000008909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029410
125170680 - 125228865
58186
ENSAPLT00000029271
125170017 - 125228865
58849
ENSAPLT00000009316
125180065 - 125228865
48801
ENSAPLT00000045569
125170017 - 125228865
58849