About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125206909_125208037_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
125206909 - 125208037
Intron Length:
1129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTCCCTGACT
Flanking Amino Acid:
PISAPTLQELRISEFNKTLQ
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.8
1.15
0.6
96.1
12.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.2
0.7
1
82.5
32.7
Minor 5ss
37.4
-1.4
2.8
50.6
45.9
Minor BPS
72.5
0.79
1.6
88.28
36.8

Associated Gene:

Gene:
ADGRG2
Ensembl Gene ID:
ENSAPLG00000008909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009316
125180065 - 125228865
48801
ENSAPLT00000045569
125170017 - 125228865
58849
ENSAPLT00000029410
125170680 - 125228865
58186
ENSAPLT00000029271
125170017 - 125228865
58849