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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125208245_125209615_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
125208245 - 125209615
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTTGT
5'SS Class:
major
3'SS Sequence:
CTTCTCATTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTTTCTTGAGC
Flanking Amino Acid:
SVMECSAENQSIHCSFILKL
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
72.6
39.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79
0.65
0.8
73.4
30
Minor 5ss
44.4
-0.6
2.5
59.5
44.9
Minor BPS
65.1
0.46
1.6
73.9
37.2

Associated Gene:

Gene:
ADGRG2
Ensembl Gene ID:
ENSAPLG00000008909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009316
125180065 - 125228865
48801
ENSAPLT00000045569
125170017 - 125228865
58849
ENSAPLT00000029410
125170680 - 125228865
58186
ENSAPLT00000029271
125170017 - 125228865
58849