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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12521156_12523265_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12521156 - 12523265
Intron Length:
2110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCCTT
5'SS Class:
major
3'SS Sequence:
TTGCTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
GTTTCTTCAGCT
Flanking Amino Acid:
LKPGYVLQFKLNIGCTNQYS
Intron Amino Acid Position:
1302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
67.2
43.7
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
87.6
0.85
0.8
80.5
37
Minor 5ss
50
0
2.8
74.1
42.3
Minor BPS
61.4
0.44
1.8
81.22
40.4

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047207
12456661 - 12742790
286130
ENSAPLT00000011979
12456661 - 12742790
286130