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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125211695_125212383_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125211695 - 125212383
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ATACTTATAAAT
Flanking Amino Acid:
VHGSLTNGSTGKILSATTYI
Intron Amino Acid Position:
681

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.2
33.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
83.9
0.76
0.8
79.9
32.1
Minor 5ss
38.7
-1.3
2.9
50.6
45.9
Minor BPS
48.7
-0
1.6
66.9
37.1

Associated Gene:

Gene:
ADGRG2
Ensembl Gene ID:
ENSAPLG00000008909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029410
125170680 - 125228865
58186
ENSAPLT00000029271
125170017 - 125228865
58849
ENSAPLT00000009316
125180065 - 125228865
48801
ENSAPLT00000045569
125170017 - 125228865
58849