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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125213036_125215770_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125213036 - 125215770
Intron Length:
2735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGCAC
5'SS Class:
major
3'SS Sequence:
ATTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TGTGCATTTATT
Flanking Amino Acid:
FSVQDSSDLQISLGINALQD
Intron Amino Acid Position:
800

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
57.3
42
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
87.8
0.85
0.8
85.3
34.2
Minor 5ss
29
-2.4
3.6
40.5
46
Minor BPS
50.8
0.1
2
73.95
42.7

Associated Gene:

Gene:
ADGRG2
Ensembl Gene ID:
ENSAPLG00000008909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029271
125170017 - 125228865
58849
ENSAPLT00000009316
125180065 - 125228865
48801
ENSAPLT00000045569
125170017 - 125228865
58849
ENSAPLT00000029410
125170680 - 125228865
58186