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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125219681_125219985_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
125219681 - 125219985
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
CAAACTTTATTT
Flanking Amino Acid:
GKVLKTRPDEFCWIKNRIVF
Intron Amino Acid Position:
1105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
69.7
37.2
Major BPS
75.1
0.62
1
65.6
41
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
42.1
-0.9
2.8
55.1
43.5
Minor BPS
49.8
0.07
1.6
62.4
42

Associated Gene:

Gene:
ADGRG2
Ensembl Gene ID:
ENSAPLG00000008909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045569
125170017 - 125228865
58849
ENSAPLT00000029410
125170680 - 125228865
58186
ENSAPLT00000029271
125170017 - 125228865
58849
ENSAPLT00000009316
125180065 - 125228865
48801