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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125220261_125223325_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125220261 - 125223325
Intron Length:
3065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
CATTGCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAA
U12 Branch Point Sequence:
TTATTAAGAAGT
Flanking Amino Acid:
YLFTIFNTLQGFFIFIFYCV
Intron Amino Acid Position:
1197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
80.7
33.8
Major BPS
75.5
0.63
1
66.3
40.4
Major PPT
79.8
0.67
0.9
73
36.9
Minor 5ss
34.5
-1.8
2.8
42.4
44.3
Minor BPS
43.9
-0.3
2.1
67.84
42.3

Associated Gene:

Gene:
ADGRG2
Ensembl Gene ID:
ENSAPLG00000008909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029410
125170680 - 125228865
58186
ENSAPLT00000029271
125170017 - 125228865
58849
ENSAPLT00000009316
125180065 - 125228865
48801
ENSAPLT00000045569
125170017 - 125228865
58849