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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125224294_125228680_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125224294 - 125228680
Intron Length:
4387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTGTTTCTACA
Flanking Amino Acid:
NDYSVHANGNGHISSEKNGV
Intron Amino Acid Position:
1282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
78.1
36.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
89.3
0.88
0.7
84.3
30.8
Minor 5ss
39.4
-1.2
3
50.9
40.1
Minor BPS
48.4
-0.1
1.9
66.46
40.2

Associated Gene:

Gene:
ADGRG2
Ensembl Gene ID:
ENSAPLG00000008909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045569
125170017 - 125228865
58849
ENSAPLT00000029410
125170680 - 125228865
58186
ENSAPLT00000029271
125170017 - 125228865
58849
ENSAPLT00000009316
125180065 - 125228865
48801