Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125233375_125234691_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

125233375 - 125234691

Intron Length:

1317

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGTCAA

5'SS Class:

strong_major

3'SS Sequence:

TCTGTTCCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTGTCAC

U12 Branch Point Sequence:

ACGAGTGTCACT

Flanking Amino Acid:

DKAKAYELEQNVVKLMRGLL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

74.3

Major BPS

57.2

0.18

1.4

63.1

44.5

Major PPT

0.74

0.8

77.3

31.5

Minor 5ss

32.5

-2

40.8

45.4

Minor BPS

-1

2.4

49.74

44.5

Associated Gene:

Gene:

PHKA2

Ensembl Gene ID:

ENSAPLG00000009522

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044782

125231876 - 125271031

39156

ENSAPLT00000009964

125231876 - 125271031

39156