Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125235664_125236448_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

125235664 - 125236448

Intron Length:

785

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCAGA

5'SS Class:

strong_major

3'SS Sequence:

CTCTTCTAATCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATATGTGTAATT

Flanking Amino Acid:

LLFLAQMTASGLRIIFTLDE

Intron Amino Acid Position:

152

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

38.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

74.1

0.54

0.9

74.3

34.2

Minor 5ss

38.7

-1.3

2.8

49.1

46.7

Minor BPS

47.8

-0

2.3

70.49

41.3

Associated Gene:

Gene:

PHKA2

Ensembl Gene ID:

ENSAPLG00000009522

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044782

125231876 - 125271031

39156

ENSAPLT00000009964

125231876 - 125271031

39156