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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125239571_125240124_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125239571 - 125240124
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTCTG
5'SS Class:
major
3'SS Sequence:
ATTGAATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGAAT
U12 Branch Point Sequence:
CATGATTGAATT
Flanking Amino Acid:
LRDGYKTPREDPSRLHYDPA
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.2
43.7
Major BPS
65.8
0.39
1.4
75.7
36.5
Major PPT
73.8
0.54
1
63.1
46.6
Minor 5ss
44
-0.7
2.8
58.7
45.8
Minor BPS
47.6
-0.1
1.7
62.52
42

Associated Gene:

Gene:
PHKA2
Ensembl Gene ID:
ENSAPLG00000009522
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044782
125231876 - 125271031
39156
ENSAPLT00000009964
125231876 - 125271031
39156