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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125243775_125244500_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125243775 - 125244500
Intron Length:
726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTTCTTCATT
Flanking Amino Acid:
MYVLSCLLAEGFLAAGEIDP
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
78.1
0.63
0.9
70.3
40
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
73.4
0.82
1.7
91.07
32.9

Associated Gene:

Gene:
PHKA2
Ensembl Gene ID:
ENSAPLG00000009522
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044782
125231876 - 125271031
39156
ENSAPLT00000009964
125231876 - 125271031
39156