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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125246436_125248434_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125246436 - 125248434
Intron Length:
1999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
ATTTTCTTTACA
Flanking Amino Acid:
RILSNLYTKLGRNENMKLSG
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
81.8
38.5
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
90
0.9
0.7
84.5
29.7
Minor 5ss
39.8
-1.1
3.2
51.2
45.5
Minor BPS
72.5
0.7
1.5
81.25
33.4

Associated Gene:

Gene:
PHKA2
Ensembl Gene ID:
ENSAPLG00000009522
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044782
125231876 - 125271031
39156
ENSAPLT00000009964
125231876 - 125271031
39156