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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125251213_125251689_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125251213 - 125251689
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAGTTG
5'SS Class:
major
3'SS Sequence:
TGTTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAC
U12 Branch Point Sequence:
GTAAGCTTCACA
Flanking Amino Acid:
LTFPITHTMLVDDGTDIHPA
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
65.5
40.8
Major BPS
67.8
0.44
1
75
30.1
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
39.8
-1.1
3.4
51.8
47.3
Minor BPS
47.7
-0.1
2.2
61.83
43.8

Associated Gene:

Gene:
PHKA2
Ensembl Gene ID:
ENSAPLG00000009522
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009964
125231876 - 125271031
39156
ENSAPLT00000044782
125231876 - 125271031
39156