Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125254696_125255946_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

125254696 - 125255946

Intron Length:

1251

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAACTGT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTGTTATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

ACTTACTCAATT

Flanking Amino Acid:

VDTPLSFDRKDSENVLNLPK

Intron Amino Acid Position:

741

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

72.1

40.4

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

77.5

0.62

0.9

35.1

Minor 5ss

44.9

-0.5

46.2

Minor BPS

59.8

0.39

1.7

75.76

Associated Gene:

Gene:

PHKA2

Ensembl Gene ID:

ENSAPLG00000009522

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044782

125231876 - 125271031

39156

ENSAPLT00000009964

125231876 - 125271031

39156