About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125260060_125261472_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125260060 - 125261472
Intron Length:
1413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTAAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTAAACT
Flanking Amino Acid:
TELARSLKCSGEEASESLMN
Intron Amino Acid Position:
934

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.6
0.37
1
61.2
43.7
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
67.7
0.63
1.6
83.79
37.4

Associated Gene:

Gene:
PHKA2
Ensembl Gene ID:
ENSAPLG00000009522
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044782
125231876 - 125271031
39156
ENSAPLT00000009964
125231876 - 125271031
39156