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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125262290_125264040_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125262290 - 125264040
Intron Length:
1751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TCTGTCTGACCT
Flanking Amino Acid:
ITKLKSEMKQFFHESHSMSS
Intron Amino Acid Position:
1008

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
82
31
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
29.7
-2.3
3.7
45.9
49.3
Minor BPS
50.8
0.1
1.9
71.74
45.4

Associated Gene:

Gene:
PHKA2
Ensembl Gene ID:
ENSAPLG00000009522
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044782
125231876 - 125271031
39156