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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125269800_125270514_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125269800 - 125270514
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTAAC
U12 Branch Point Sequence:
CGTTCCCTACTT
Flanking Amino Acid:
MANDLFLQELKSFGATGGIL
Intron Amino Acid Position:
1149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
54.3
0.11
1.2
57.5
37.5
Major PPT
84
0.77
0.8
81
36.6
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
52.7
0.16
2
73.17
43.9

Associated Gene:

Gene:
PHKA2
Ensembl Gene ID:
ENSAPLG00000009522
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009964
125231876 - 125271031
39156
ENSAPLT00000044782
125231876 - 125271031
39156