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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125275795_125276692_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125275795 - 125276692
Intron Length:
898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCCA
5'SS Class:
major
3'SS Sequence:
ACCCCTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
TAACCATGAACT
Flanking Amino Acid:
AFEKHDCDNTGNISVSDWAA
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.2
63.2
42.9
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
68.5
0.42
1
64.5
35.8
Minor 5ss
36.6
-1.5
3.3
48.7
47
Minor BPS
56.5
0.28
1.8
74.78
40.6

Associated Gene:

Gene:
PPEF1
Ensembl Gene ID:
ENSAPLG00000010050
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010482
125273988 - 125298814
24827