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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125279931_125282002_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125279931 - 125282002
Intron Length:
2072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TATTGTTTGATC
Flanking Amino Acid:
DFLCSLERNKLKSLMRPPKP
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
80.3
0.68
1
79.2
38.4
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
58.8
0.26
1.7
69.8
36.3

Associated Gene:

Gene:
PPEF1
Ensembl Gene ID:
ENSAPLG00000010050
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010482
125273988 - 125298814
24827