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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125282153_125282601_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125282153 - 125282601
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
GTACACTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
CTATCCGAAATA
Flanking Amino Acid:
FSNEVFSKYKVHAKVILYVL
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
73.2
0.52
1
65.7
40.4
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
48.1
-0.1
2.3
63.45
43.5

Associated Gene:

Gene:
PPEF1
Ensembl Gene ID:
ENSAPLG00000010050
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010482
125273988 - 125298814
24827