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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125282639_125283448_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
125282639 - 125283448
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCATGACAT
Flanking Amino Acid:
GNHEDYVINLRYGFSNEVFS
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.9
29.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
84.3
0.77
0.8
81.4
35.2
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
46.4
-0.2
2
67.67
42.1

Associated Gene:

Gene:
PPEF1
Ensembl Gene ID:
ENSAPLG00000010050
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010482
125273988 - 125298814
24827