Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125286787_125288787_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

125286787 - 125288787

Intron Length:

2001

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGATGC

5'SS Class:

strong_major

3'SS Sequence:

TTGTTTCCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTCCAT

U12 Branch Point Sequence:

TATTTGGTAACA

Flanking Amino Acid:

VSYSKEITICGDLHGNLDDL

Intron Amino Acid Position:

178

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

0.9

68.6

37.4

Major BPS

68.5

0.46

1.2

78.5

35.1

Major PPT

82.2

0.72

0.8

78.3

30.6

Minor 5ss

38.4

-1.3

3.1

47.7

42.5

Minor BPS

48.9

-0

2.6

71.72

40.6

Associated Gene:

Gene:

PPEF1

Ensembl Gene ID:

ENSAPLG00000010050

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010482

125273988 - 125298814

24827