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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125319071_125319681_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125319071 - 125319681
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
ACATTCCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
PAALALSPGEDERLELWHSK
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70.7
0.47
0.8
67.4
34.4
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
RS1
Ensembl Gene ID:
ENSAPLG00000010522
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010946
125319029 - 125324435
5407