About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125319788_125323612_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125319788 - 125323612
Intron Length:
3825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGGC
5'SS Class:
major
3'SS Sequence:
CCTTGCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAGCAT
U12 Branch Point Sequence:
CAGTCCCTGACT
Flanking Amino Acid:
SRTNSLECMPECPYHKPLGF
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
65.1
40.9
Major BPS
50.9
0.02
1.5
63.4
42.8
Major PPT
79.4
0.66
0.8
72.8
32
Minor 5ss
29.6
-2.3
3.5
41.6
45.1
Minor BPS
59.5
0.38
1.7
72.86
44

Associated Gene:

Gene:
RS1
Ensembl Gene ID:
ENSAPLG00000010522
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010946
125319029 - 125324435
5407