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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125323755_125323891_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
125323755 - 125323891
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
GGTGTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTGCAG
U12 Branch Point Sequence:
GAGGGTGCAGCG
Flanking Amino Acid:
NKARLNGQGFGCAWLSKYQD
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.8
43.8
Major BPS
37.4
-0.7
1.7
42.8
49.4
Major PPT
65.7
0.35
1
55
41.4
Minor 5ss
31.9
-2.1
2.9
33
41.8
Minor BPS
27.8
-1.8
2.1
24.7
36

Associated Gene:

Gene:
RS1
Ensembl Gene ID:
ENSAPLG00000010522
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010946
125319029 - 125324435
5407