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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125324088_125324282_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125324088 - 125324282
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GGTCCCTGAACC
Flanking Amino Acid:
YYKDQTGNNRVFYGNSDRSS
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.5
38.7
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
78.2
0.63
0.9
72.6
37.6
Minor 5ss
26.2
-2.7
2.9
22.7
37.4
Minor BPS
65.7
0.47
1.5
71.25
38.9

Associated Gene:

Gene:
RS1
Ensembl Gene ID:
ENSAPLG00000010522
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010946
125319029 - 125324435
5407