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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125361242_125365286_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125361242 - 125365286
Intron Length:
4045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTACTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTACTTTTACA
Flanking Amino Acid:
YSNPRFHGLRFPAVNHPQSL
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.3
34.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.1
0.75
0.8
76.7
36.8
Minor 5ss
29.3
-2.4
3.3
29.9
43.1
Minor BPS
63.9
0.43
1.6
74.38
36.6

Associated Gene:

Gene:
CDKL5
Ensembl Gene ID:
ENSAPLG00000010656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042983
125333467 - 125412429
78963
ENSAPLT00000011106
125333467 - 125412263
78797