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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125365477_125372263_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
125365477 - 125372263
Intron Length:
6787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTAACTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TGTACTTTAACT
Flanking Amino Acid:
RWYRSPELLLGAPYGKAVDM
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
80.7
33.8
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
83.5
0.75
0.9
76.7
37
Minor 5ss
35.6
-1.6
2.6
35.6
40.5
Minor BPS
80.1
1.02
1.1
89.7
34.1

Associated Gene:

Gene:
CDKL5
Ensembl Gene ID:
ENSAPLG00000010656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042983
125333467 - 125412429
78963
ENSAPLT00000011106
125333467 - 125412263
78797