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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125384575_125411671_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125384575 - 125411671
Intron Length:
27097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTTGCTTTACA
Flanking Amino Acid:
YGVVLKCRHKETHEIVAIKK
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
89.7
0.89
0.7
84
31
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
67.1
0.53
2.1
83.52
37

Associated Gene:

Gene:
CDKL5
Ensembl Gene ID:
ENSAPLG00000010656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042983
125333467 - 125412429
78963
ENSAPLT00000011106
125333467 - 125412263
78797