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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125411707_125412199_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125411707 - 125412199
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATTTTCTGATTT
Flanking Amino Acid:
KFEILGVVGEGAYGVVLKCR
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
89
0.88
0.8
87.9
29.5
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
59.5
0.38
1.7
78.82
37.6

Associated Gene:

Gene:
CDKL5
Ensembl Gene ID:
ENSAPLG00000010656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011106
125333467 - 125412263
78797
ENSAPLT00000042983
125333467 - 125412429
78963