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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12543778_12547905_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12543778 - 12547905
Intron Length:
4128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTTTCAATAATA
Flanking Amino Acid:
HYSYLNYHEPRIISVELPED
Intron Amino Acid Position:
819

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
80
0.75
1
78.6
31
Major PPT
85.4
0.8
0.9
76.9
42.1
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
58.3
0.26
1.9
73.54
38.3

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047207
12456661 - 12742790
286130
ENSAPLT00000011979
12456661 - 12742790
286130