Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12548068_12548692_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12548068 - 12548692

Intron Length:

625

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAGCA

5'SS Class:

strong_major

3'SS Sequence:

AATTCTGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCGAAAT

U12 Branch Point Sequence:

TACCCTCGAAAT

Flanking Amino Acid:

ITSFLDSSQSRFLQFTLRLG

Intron Amino Acid Position:

765

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.8

73.9

29.7

Major BPS

54.6

0.12

1.3

61.2

Major PPT

73.6

0.53

66.6

39.7

Minor 5ss

25.3

-2.8

3.1

30.4

42.9

Minor BPS

45.2

-0.2

1.8

61.93

41.3

Associated Gene:

Gene:

RELN

Ensembl Gene ID:

ENSAPLG00000011317

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011979

12456661 - 12742790

286130

ENSAPLT00000047207

12456661 - 12742790

286130