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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125491386_125496452_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125491386 - 125496452
Intron Length:
5067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTGCATTTATT
Flanking Amino Acid:
MGRTAAKDSKNIKKEKD
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.1
39.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
86.1
0.81
0.6
85.1
22.4
Minor 5ss
27.9
-2.5
3.2
39.3
46.1
Minor BPS
52
0.14
2
75.36
41.2

Associated Gene:

Gene:
SCML2
Ensembl Gene ID:
ENSAPLG00000010725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036153
125487156 - 125547725
60570