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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125491386_125501829_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125491386 - 125501829
Intron Length:
10444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TTATGTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATCT
Flanking Amino Acid:
MGRTAAKEQFNWDDYLK
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.1
39.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.3
0.73
0.9
73.7
41.5
Minor 5ss
27.9
-2.5
3.2
39.3
46.1
Minor BPS
68.3
0.65
1.5
82.72
39.3

Associated Gene:

Gene:
SCML2
Ensembl Gene ID:
ENSAPLG00000010725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011200
125491278 - 125547725
56448