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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125496522_125501829_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125496522 - 125501829
Intron Length:
5308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTATGTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATCT
Flanking Amino Acid:
QQANNPSLNSEQFNWDDYLK
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.3
0.73
0.9
73.7
41.5
Minor 5ss
40.4
-1.1
3.2
56.3
42.5
Minor BPS
68.3
0.65
1.5
82.72
39.3

Associated Gene:

Gene:
SCML2
Ensembl Gene ID:
ENSAPLG00000010725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036153
125487156 - 125547725
60570