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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12549935_12552759_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12549935 - 12552759
Intron Length:
2825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTCAGTATT
5'SS Class:
major
3'SS Sequence:
CTTTTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
CTTCATTTAACA
Flanking Amino Acid:
ILGNMWAIDNIYIGPSCLKF
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.3
77.3
37.6
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
89.5
0.89
0.6
84.8
22.8
Minor 5ss
38.9
-1.2
2.9
54
37.7
Minor BPS
65.6
0.49
1.5
73.69
37.9

Associated Gene:

Gene:
RELN
Ensembl Gene ID:
ENSAPLG00000011317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047207
12456661 - 12742790
286130
ENSAPLT00000011979
12456661 - 12742790
286130