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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125501901_125507269_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125501901 - 125507269
Intron Length:
5369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTACTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TTGTCTCTTACT
Flanking Amino Acid:
VAAPLHCFRQSRSPPTNDFK
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.8
40.4
Major BPS
69.2
0.48
1
61
37.1
Major PPT
78.8
0.65
0.8
74.4
29.2
Minor 5ss
43.3
-0.7
2.9
55.6
48.6
Minor BPS
57.7
0.32
2
80.68
41.1

Associated Gene:

Gene:
SCML2
Ensembl Gene ID:
ENSAPLG00000010725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036153
125487156 - 125547725
60570
ENSAPLT00000011200
125491278 - 125547725
56448