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Intron Name: Anas_platyrhynchos_platyrhynchos_1_125511706_125513102_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

125511706 - 125513102

Intron Length:

1397

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAGGA

5'SS Class:

strong_major

3'SS Sequence:

CTTACTATTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACAAAT

U12 Branch Point Sequence:

CCAATCTTACTA

Flanking Amino Acid:

EMAPAAFFKKEPPKPVTNCF

Intron Amino Acid Position:

140

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.8

75.2

35.1

Major BPS

69.5

0.48

73.5

28.6

Major PPT

75.8

0.58

0.9

70.4

34.7

Minor 5ss

29.8

-2.3

3.3

38.8

46.3

Minor BPS

47.9

-0.1

1.6

51.67

40.8

Associated Gene:

Gene:

SCML2

Ensembl Gene ID:

ENSAPLG00000010725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036153

125487156 - 125547725

60570

ENSAPLT00000011200

125491278 - 125547725

56448