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Intron Name: Anas_platyrhynchos_platyrhynchos_1_125513347_125526211_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

125513347 - 125526211

Intron Length:

12865

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGATGA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTTCCTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTGT

U12 Branch Point Sequence:

TTGTTTTTGTTT

Flanking Amino Acid:

GDALQPPGNNVAITKSSAKI

Intron Amino Acid Position:

221

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

70.5

36.3

Major BPS

38.1

-0.7

4.3

71.7

44.6

Major PPT

85.9

0.81

0.7

84.9

29.9

Minor 5ss

37.4

-1.4

44.6

45.1

Minor BPS

-0.3

3.4

73.17

Associated Gene:

Gene:

SCML2

Ensembl Gene ID:

ENSAPLG00000010725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036153

125487156 - 125547725

60570

ENSAPLT00000011200

125491278 - 125547725

56448