Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_125531165_125533103_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

125531165 - 125533103

Intron Length:

1939

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAGTA

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCACAC

U12 Branch Point Sequence:

TACTCTACAGTT

Flanking Amino Acid:

SGATAAVISTVCVYVNKHGN

Intron Amino Acid Position:

350

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

0.9

77.6

30.5

Major BPS

67.8

0.44

30.1

Major PPT

88.3

0.86

0.7

83.5

24.7

Minor 5ss

33.4

-1.9

3.6

46.9

48.4

Minor BPS

44.4

-0.3

1.9

62.19

42.2

Associated Gene:

Gene:

SCML2

Ensembl Gene ID:

ENSAPLG00000010725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036153

125487156 - 125547725

60570

ENSAPLT00000011200

125491278 - 125547725

56448