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Intron Name: Anas_platyrhynchos_platyrhynchos_1_125533308_125537274_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

125533308 - 125537274

Intron Length:

3967

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTATGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTGTTCACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCATGAT

U12 Branch Point Sequence:

TTCTTGTTCACA

Flanking Amino Acid:

SGHHGGEMITASFDGEKHAI

Intron Amino Acid Position:

418

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

0.9

32.7

Major BPS

72.1

0.55

1.1

44.2

Major PPT

83.9

0.76

0.8

79.1

32.9

Minor 5ss

38.2

-1.3

3.1

45.3

45.2

Minor BPS

49.4

-0

2.4

70.02

42.9

Associated Gene:

Gene:

SCML2

Ensembl Gene ID:

ENSAPLG00000010725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036153

125487156 - 125547725

60570

ENSAPLT00000011200

125491278 - 125547725

56448